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from transformers import EsmTokenizer, EsmForMaskedLM
model_path = "/your/path/to/SaProt_650M_PDB"
tokenizer = EsmTokenizer.from_pretrained(model_path)
model = EsmForMaskedLM.from_pretrained(model_path)
#################### Example ####################
device = "cuda"
model.to(device)
seq = "MdEvVpQpLrVyQdYaKv"
tokens = tokenizer.tokenize(seq)
print(tokens)
inputs = tokenizer(seq, return_tensors="pt")
inputs = {k: v.to(device) for k, v in inputs.items()}
outputs = model(**inputs)
print(outputs.logits.shape)
"""
['Md', 'Ev', 'Vp', 'Qp', 'Lr', 'Vy', 'Qd', 'Ya', 'Kv']
torch.Size([1, 11, 446])
"""SaProt_650M_AF2.pt. We provide a function to load the model.from utils.esm_loader import load_esm_saprot
model_path = "/your/path/to/SaProt_650M_PDB.pt"
model, alphabet = load_esm_saprot(model_path)