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gpn-brassicales – AI Model by songlab | AlphaNeural AI

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songlab/
gpn-brassicales

like

0

variant-effect-prediction

songlab/genomes-brassicales-balanced-v1

autotrain_compatible

endpoints_compatible

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GPN trained on Arabidopsis thaliana and 7 other Brassicales

See https://github.com/songlab-cal/gpn for more details.

Basic usage:

python

import gpn.model
from transformers import AutoModel, AutoModelForMaskedLM

model = AutoModel.from_pretrained("songlab/gpn-brassicales")
# or
model = AutoModelForMaskedLM.from_pretrained("songlab/gpn-brassicales")

Some hparams:

repeat_weight: 0.1
lr: 120k at 1e-3 + 30k cosine decay