songlab/

TraitGym

Benchmarking DNA Sequence Models for Causal Regulatory Variant Prediction in Human Genetics 🏆 Leaderboard: https://huggingface.co/spaces/songlab/TraitGym-leaderboard

Load a datasetfrom datasets import load_dataset

dataset = load_dataset("songlab/TraitGym", "mendelian_traits", split="test")

Example notebook to run variant effect prediction with a gLM, runs in 5 min on Google Colab: TraitGym.ipynb