from transformers import AutoModelForSequenceClassification, AutoTokenizer

model = AutoModelForSequenceClassification.from_pretrained(
    "zhangtaolab/PlantHelixSeek-CRE", trust_remote_code=True
)
tokenizer = AutoTokenizer.from_pretrained(
    "zhangtaolab/PlantHelixSeek-CRE", trust_remote_code=True
)

Full genome-wide CRE prediction + peak calling pipeline: see scripts/cis_regulatory/.

License

Type: Sequence classification (binary)
Base model: <a href="https://huggingface.co/zhangtaolab/PlantHelixSeek" target="_blank" rel="noopener noreferrer" class="text-blue-400 hover:text-blue-300 underline underline-offset-2 transition-colors">PlantHelixSeek (470M)

CC-BY-NC 4.0