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yuki-sonoda/
MucusPlugDetector

Name: MucusPlugDetector
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Mucus Plug Detector

Model weights and sample LIDC-IDRI inference inputs for the paper:

Sonoda Y, et al. A deep learning-based automated detection of mucus plugs in chest CT. ERJ Open Research 2025. https://doi.org/10.1183/23120541.00377-2025

GitHub: https://github.com/miscelllaneous/MucusPlugDetector

models/vnet_2.pth, models/two-color.pth — trained model weights
inference_input/*.nii.gz — sample CT volumes from LIDC-IDRI for inference demo

License

Released under a Non-Commercial Research License (see LICENSE). For research use only.

Acknowledgement

The sample inference inputs are derived from the LIDC-IDRI dataset, available from The Cancer Imaging Archive (https://www.cancerimagingarchive.net/collection/lidc-idri/), licensed under CC BY 3.0. The authors acknowledge the National Cancer Institute and the Foundation for the National Institutes of Health, and their critical role in the creation of the free publicly available LIDC/IDRI Database used in this study.

Tools and datasets used in the associated paper:

ATM'22 — https://atm22.grand-challenge.org/
LIDC-IDRI — https://www.cancerimagingarchive.net/collection/lidc-idri/
lungmask — https://github.com/JoHof/lungmask
TotalSegmentator — https://github.com/wasserth/TotalSegmentator

yuki-sonoda/MucusPlugDetector

Mucus Plug Detector

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Acknowledgement

yuki-sonoda/
MucusPlugDetector