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sns-paper-flashzoi-silicuspluscgdcrectcfexonte-from-scratch – AI Model by tanaylab | AlphaNeural AI
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sns-paper-flashzoi-silicuspluscgdcrectcfexonte-from-scratch
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safetensors
biology
genomics
epigenomics
borzoi
flashzoi
polycomb
h3k27me3
h3k4me3
mouse
in-silico-genome
from-scratch
custom
apache-2.0
us
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Flashzoi on silicusPlusCGDCreCtcfExonTE — Trained from Scratch
Borzoi architecture trained from random initialization on the
silicusPlusCGDCreCtcfExonTE
synthetic genome with CUT&Tag H3K27me3 and H3K4me3 targets.
Genome
: Silicus + CGD + CRE + CTCF + Exon + TE (telescope step 5, full)
Architecture
: Borzoi (from scratch, model name "flashzoi")
Receptive field
: 524 kb
Resolution
: 32 bp
Paper
: Casimov, Lifshitz et al., "Reverse engineering the genomic encodings of the pluripotent epigenome"
See the
paper companion repository
for full code and configs.
