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sns-paper-borzoi-fm-silicus – AI Model by tanaylab | AlphaNeural AI
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tanaylab
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sns-paper-borzoi-fm-silicus
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safetensors
biology
genomics
epigenomics
borzoi
polycomb
h3k27me3
h3k4me3
mouse
in-silico-genome
fine-tuned
foundation-model
custom
apache-2.0
us
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Borzoi FM fine-tuned on silicus
Pre-trained Borzoi foundation model (
johahi/borzoi-replicate-0
) fine-tuned on the
silicus
synthetic genome with CUT&Tag H3K27me3 and H3K4me3 targets.
Genome
: Base silicus genome
Base model
:
johahi/borzoi-replicate-0
Receptive field
: 524 kb
Resolution
: 32 bp
Paper
: Casimov, Lifshitz et al., "Reverse engineering the genomic encodings of the pluripotent epigenome"
See the
paper companion repository
for full code and configs.
