miniALBERT is a recursive transformer model which uses cross-layer parameter sharing, embedding factorisation, and bottleneck adapters to achieve high parameter efficiency.
Since miniALBERT is a compact model, it is trained using a layer-to-layer distillation technique, using the BioClinicalBERT model as the teacher. This model is trained for 3 epochs on the MIMIC-III notes dataset.
In terms of architecture, this model uses an embedding dimension of 312, a hidden size of 768, an MLP expansion rate of 4, and a reduction factor of 16 for bottleneck adapters. In general, this model uses 6 recursions and has a unique parameter count of 18 million parameters.
Usage
Since miniALBERT uses a unique architecture it can not be loaded using ts.AutoModel for now. To load the model, first, clone the miniALBERT GitHub project, using the below code:
Finally, load the model like a regular model in the transformers library using the below code:
Python
1# For NER use the below code
2model = MiniAlbertForTokenClassification.from_pretrained("nlpie/clinical-miniALBERT-312")
3# For Sequence Classification use the below code
4model = MiniAlbertForTokenClassification.from_pretrained("nlpie/clinical-miniALBERT-312")
In addition, For efficient fine-tuning using the pre-trained bottleneck adapters use the below code:
model.trainAdaptersOnly()
Citation
If you use the model, please cite our paper:
bibtex
1@article{rohanian2023lightweight,
2 title={Lightweight transformers for clinical natural language processing},
3 author={Rohanian, Omid and Nouriborji, Mohammadmahdi and Jauncey, Hannah and Kouchaki, Samaneh and Nooralahzadeh, Farhad and Clifton, Lei and Merson, Laura and Clifton, David A and ISARIC Clinical Characterisation Group and others},
4 journal={Natural Language Engineering},
5 pages={1--28},
6 year={2023},
7 publisher={Cambridge University Press}
8}