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| Feature | Description |
|---|---|
| Name | BiomedNLP-PubMedBERT-ProteinStructure-NER-2.1_onnx |
| Default Pipeline | transformer, ner |
| Components | transformer, ner |
| Vectors | 0 keys, 0 unique vectors (0 dimensions) |
| Sources | n/a |
| License | n/a |
| Author | Melanie Vollmar |
| Component | Labels |
|---|---|
ner | "bond_interaction", "chemical", "complex_assembly", "evidence", "experimental_method", "gene", "mutant", "oligomeric_state", "protein", "protein_state", "protein_type", "ptm", "residue_name", "residue_name_number", "residue_number", "residue_range", "site", "species", "structure_element", "taxonomy_domain" |
| entity type | precision | recall | F1 | sample number |
|---|---|---|---|---|
| "bond_interaction" | 0.94 | 0.92 | 0.93 | 41 |
| "chemical" | 0.86 | 0.92 | 0.89 | 589 |
| "complex_assembly" | 0.85 | 0.89 | 0.87 | 185 |
| "evidence" | 0.83 | 0.89 | 0.86 | 392 |
| "experimental_method" | 0.86 | 0.85 | 0.86 | 310 |
| "gene" | 0.73 | 0.86 | 0.79 | 26 |
| "mutant" | 0.88 | 0.94 | 0.91 | 216 |
| "oligomeric_state" | 0.92 | 0.96 | 0.94 | 116 |
| "protein" | 0.91 | 0.95 | 0.93 | 755 |
| "protein_state" | 0.78 | 0.88 | 0.82 | 577 |
| "protein_type" | 0.87 | 0.85 | 0.86 | 265 |
| "ptm" | 0.67 | 0.69 | 0.68 | 33 |
| "residue_name" | 0.88 | 0.95 | 0.91 | 76 |
| "residue_name_number" | 0.94 | 0.96 | 0.95 | 262 |
| "residue_number" | 0.62 | 0.88 | 0.73 | 45 |
| "residue_range" | 0.87 | 0.79 | 0.83 | 31 |
| "site" | 0.88 | 0.90 | 0.89 | 245 |
| "species" | 0.95 | 0.97 | 0.96 | 76 |
| "structure_element" | 0.90 | 0.93 | 0.92 | 751 |
| "taxonomy_domain" | 0.99 | 0.99 | 0.99 | 83 |