This named entity recognition model detects the following types of medical attributes:
Experiencer:
Patient: e.g. paciente
Family_member: e.g. padre
Other: e.g. cirujano
Event temporality:
Future: e.g. cirugíapendiente
History_of: e.g. antecedentes demigraña
The model achieves the following results on the test set (results are averaged over 5 evaluation rounds):
Precision: 0.868 (±0.023)
Recall: 0.831 (±0.014)
F1: 0.849 (±0.005)
Accuracy: 0.986 (±0.001)
Model description
This model adapts the pre-trained model bert-base-multilingual-cased, the multilingual version of the BERT model presented in Devlin al. (2019), which was pre-trained on a corpus derived from Wikipedia covering 104 languages.
The model is fine-tuned to conduct medical named entity recognition on texts about in Spanish using the CT-EBM-ES corpus (Campillos-Llanos et al. 2021) vs 2.
If you use this model, please, cite as follows:
@article{campillosetal2024,
title = {{Hybrid tool for semantic annotation and concept extraction of medical texts in Spanish}},
author = {Campillos-Llanos, Leonardo and Valverde-Mateos, Ana and Capllonch-Carri{\'o}n, Adri{\'a}n},
journal = {BMC Bioinformatics},
year={2024},
publisher={BioMed Central}
}
Intended uses & limitations
Disclosure: This model is under development and needs to be improved. It should not be used for medical decision making without human assistance and supervision
This model is intended for a generalist purpose, and may have bias and/or any other undesirable distortions.
Third parties who deploy or provide systems and/or services using any of these models (or using systems based on these models) should note that it is their responsibility to mitigate the risks arising from their use. Third parties, in any event, need to comply with applicable regulations, including regulations concerning the use of artificial intelligence.
The owner or creator of the models will in no event be liable for any results arising from the use made by third parties of these models.
Descargo de responsabilidad: Esta herramienta se encuentra en desarrollo y no debe ser empleada para la toma de decisiones médicas
La finalidad de este modelo es generalista, y se advierte que puede tener sesgos y/u otro tipo de distorsiones indeseables.
Terceras partes que desplieguen o proporcionen sistemas y/o servicios usando alguno de estos modelos (o utilizando sistemas basados en estos modelos) han tener presente que es su responsabilidad abordar y minimizar los riesgos derivados de su uso. Las terceras partes, en cualquier circunstancia, deben cumplir con la normativa aplicable, incluyendo la normativa que concierne al uso de la inteligencia artificial.
El propietario o creador de los modelos de ningún modo será responsable de los resultados derivados del uso que las terceras partes hagan de estos modelos.
Training and evaluation data
The model is fine-tuned on the Clinical Trials for Evidence-Based-Medicine in Spanish (CT-EBM-SP) corpus vs 2.
The CT-EBM-SP corpus is a collection of 1200 texts about clinical trials studies and clinical trials announcements:
500 abstracts from journals published under a Creative Commons license, e.g. available in PubMed or the Scientific Electronic Library Online (SciELO)
700 clinical trials announcements published in the European Clinical Trials Register and Repositorio Español de Estudios Clínicos
If you use the CT-EBM-ES resource, please, cite as follows:
