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weights/ # PyTorch Lightning checkpoint files (.ckpt)
config/ # Hydra YAML configuration files
vocab/ # CpG vocabulary files (.json)| Model | Size | Parameters | Model Name |
|---|---|---|---|
| CpGPT-2M | 30MB | ~2.5M | small |
| CpGPT-100M | 1.1GB | ~101M | large |
1# Install huggingface_hub
2pip install huggingface_hub
3
4# Download all model files
5huggingface-cli download lucascamillomd/cpgpt-models --local-dir dependencies/model
6
7# Or download a specific model
8huggingface-cli download lucascamillomd/cpgpt-models weights/small.ckpt config/small.yaml vocab/small.json --local-dir dependencies/model1@article{camillo2024cpgpt,
2 title={CpGPT: A Foundation Model for DNA Methylation},
3 author={de Lima Camillo, Lucas Paulo et al.},
4 journal={bioRxiv},
5 year={2024},
6 doi={10.1101/2024.10.24.619766}
7}