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vae/config.yaml, vae/best_model.pth # shared microscopy VAE (all cell lines/drugs)
flow/<drug>/config.yaml, best_model.pt,
latent_scale.pt # one joint flow matching model per drugscripts/download_checkpoints.py from the GitHub repo above;
the files land directly in experiments/, ready to use with
evaluate_vae.py / evaluate_latent_flow_joint.py.1@article{bogensperger2026joint,
2 title={Joint Flow Matching Enables Continuous Dose-Conditioned Cell Morphing},
3 author={Bogensperger, Lea and Merlo, Manuela and Baumgartner, Martin and Krauthammer, Michael and Ciraulo, Bernard},
4 journal={arXiv preprint arXiv:2608.16424},
5 year={2026}
6}