Tn5 Bias Model - Rat GH3
Description
Tn5 bias model trained as part of a ChromBPNet pipeline on pituitary ATAC-seq data.
It models the sequence-intrinsic insertion bias of the Tn5 transposase, which must be accounted for before learning true chromatin accessibility signals.
Files
models/bias.h5 — Trained Tn5 bias model
Training Details
- Genome: rn6
- Cell type: GH3
- Data type: Bulk ATAC-seq
- Framework: ChromBPNet
Source
- Andoniadou Lab (Unpublished)
Association
Part of a ChromBPNet atlas of pituitary cell types.
