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ChromBPNet-GH3-SOX2 – AI Model by ge8rgia | AlphaNeural AI
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ChromBPNet-GH3-SOX2
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ChromBPNet
deep-learning
genomics
ATAC-seq
pituitary
mouse
us
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Rat GH3 ChromBPNet Model
Description
ChromBPNet model trained on bulk ATAC-seq data from GH3 cells.
Files
models/chrombpnet.h5
— Full ChromBPNet model
models/chrombpnet_nobias.h5
— ChromBPNet model without bias correction
models/bias_model_scaled.h5
— Scaled Tn5 bias model
Training Details
Genome:
mm10
Cell type:
GH3
Data type:
Bulk ATAC-seq
Condition:
SOX2 overexpression
Bias model used:
Tn5-bias-rn6-GH3/bias.h5
Framework:
ChromBPNet
Context
Part of a ChromBPNet atlas of rat pituitary cell types.
Bias correction was performed using the corresponding bias model:
Pituitary ChromBPNet - Bias models
See the full atlas:
Pituitary ChromBPNet - Bulk ATAC-seq Models
