The HealthHistoryBio_ClinicalBERT-en-ft was fine-tuned on the pre-trained model
efbaro/HealthHistoryBio_ClinicalBERT-en and with patient data from health insurances organized in the form of historical sentences. The initial objective of the training was to predict hospitalizations, however, due to the possibility of applications in other tasks, we made these models available to the scientific community. This model was trained with English data translated from Portuguese Health Insurance Data. There are also other training approaches that can be seen at:
The model was fine-tuned from 83,715 historical sentences from health insurance patients generated using the approach described in this paper
Predicting Hospitalization from Health Insurance Data.
The model was fine-tuned on a GeForce NVIDIA RTX A5000 24GB GPU from laboratories of
IT departament at UFPR (Federal University of Paraná).
We use a batch size of 16, a maximum sequence length of 512 tokens, accumulation steps of 4, number of epochs = 1 and a learning rate of 1.10−4 to fine-tune this model.
1from transformers import AutoTokenizer, AutoModel
2tokenizer = AutoTokenizer.from_pretrained("efbaro/HealthHistoryBio_ClinicalBERT-en-ft")
3model = AutoModel.from_pretrained("efbaro/HealthHistoryBio_ClinicalBERT-en-ft")