Structured text documents encoding protein residue sequences and 3D contact maps from AlphaFold Database v4 predicted structures, stored as Parquet files. Each row is one protein document with metadata.
Source structures: timodonnell/afdb-24M and timodonnell/afdb-1.6M
Each subdirectory contains documents generated with a different scheme. All schemes share leakage-resistant train/val/test splits based on structural… See the full description on the dataset page:
https://huggingface.co/datasets/timodonnell/protein-docs.
