prism-oncology/

novae

Full novae dataset, including:

All the spatial transcriptomics samples used to train Novae Protein samples used in the article Some Visium and Visium HD samples Synthetic data samples

You can download this dataset from the API, see novae.load_dataset See here the list of available models trained on this dataset.

[!NOTE] Note that Novae was trained on the image-based spatial transcriptomics samples. This means that it was not trained on the Visium/VisiumHD samples… See the full description on the dataset page: https://huggingface.co/datasets/prism-oncology/novae.