This repository contains results from the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images". Authors: Kalin Nonchev, Sebastian Dawo, Karina Selina, Holger Moch, Sonali Andani, Tumor Profiler Consortium, Viktor Hendrik Koelzer, and Gunnar Rätsch The preprint is available here.

What is TCGA digital spatial transcriptomics?

We trained a model using… See the full description on the dataset page: https://huggingface.co/datasets/nonchev/TCGA_virtual_spatial_transcriptomics.