This data was used to train model:
https://huggingface.co/mevol/BiomedNLP-PubMedBERT-ProteinStructure-NER-v1.2
There are 19 different entity types in this dataset:
"chemical", "complex_assembly", "evidence", "experimental_method", "gene", "mutant",
"oligomeric_state", "protein", "protein_state", "protein_type", "ptm", "residue_name",
"residue_name_number","residue_number", "residue_range", "site", "species", "structure_element",
"taxonomy_domain"
The data prepared as IOB… See the full description on the dataset page:
https://huggingface.co/datasets/mevol/protein_structure_NER_model_v1.2.
