Supervised variant-effect-prediction benchmark of caQTLs (ATAC-seq chromatin accessibility):
statistically significant chromatin-accessibility QTLs vs control variants. These
are the standardized ChromBPNet benchmark variant sets (Synapse
syn64126763) used by both the
ChromBPNet and AlphaGenome papers, brought into the marin-dna evals pipeline with
chromosome-parity train/test splits. Each row carries precomputed
ChromBPNet/Enformer baseline scores, so those… See the full description on the dataset page:
https://huggingface.co/datasets/marin-dna/evals_caqtl.
