CONCH is a vision-language foundation model created by the Mahmood Lab. We can use CONCH to embed patches from whole slide images.
In this dataset, we have embedded the EBRAINS whole slide images with IDH mutation status (n=873 slides). See this link for the EBRAINS dataset:
https://doi.org/10.25493/WQ48-ZGX .
The vision-only directory contains embeddings with proj_contrast=False, and the vision-language directory contains embeddings with… See the full description on the dataset page:
https://huggingface.co/datasets/kaczmarj/ebrains-idh-conch.
