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aparulsarma/
openenv-pathway-analysis-env

openenv

bioinformatics

ai-agents

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OpenEnv Pathway Analysis Environment

This repository packages pathway_analysis_env for Hugging Face Hub publication.

Contents

envs/pathway_analysis_env/ environment code reproducible GEO benchmark inputs for 3 tasks task expansion scripts: create_geo_task.py append_task_to_manifest.py

Run locally

uv sync --all-extras PYTHONPATH=src:envs uv run python envs/pathway_analysis_env/scripts/run_agent_eval_suite.py --manifest… See the full description on the dataset page: https://huggingface.co/datasets/aparulsarma/openenv-pathway-analysis-env.