This data was collected from the PRIDE repository with the identifiers PXD004732, PXD010595, and PXD021013. The datasets were originally obtained by analyzing pools of approximately 1000 synthetic peptides. RAW data was analyzed using either specific, semi-specific, or unspecific in silico digestion settings in MaxQuant and with Trypsin, LysN, or AspN as specified protease. In all studies, peptide pools were subjected to liquid chromatography using a… See the full description on the dataset page:
https://huggingface.co/datasets/Wilhelmlab/detectability-proteometools.
