A PubMed-based dataset, used for the fine-tuning of the BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext model for the context-based classification of the names of molecular pathways.
HuggingFace card of the fine-tuned model.
GitHub link with a notebooks, for the fine-tuning and application of the model.
If you found the developed datasets to be useful in your research, please cite the following articles:
Ivanisenko, T.V., Saik, O.V., Demenkov, P.S. et al. ANDDigest:… See the full description on the dataset page:
https://huggingface.co/datasets/Timofey/Drugs_Metabolites_Fine-Tuning_Dataset.
