OpenProteinSet is an open-source corpus released by the OpenFold team (Ahdritz et al., NeurIPS 2023 Datasets and Benchmarks) that reproduces and extends the kind of training data used for AlphaFold2, which DeepMind never released. It contains more than 16 million precomputed multiple sequence alignments (MSAs), structural template hits from the Protein Data Bank, and AlphaFold2 structure predictions, and was used to train OpenFold from scratch to parity with… See the full description on the dataset page:
https://huggingface.co/datasets/LiteFold/OpenProteinSet.
