Iluthra/

3D_Chromatin_interaction_Evaluator_GAMEAPI_H1_ESC_Chromosome_9

This Evaluator requests an interaction matrix readout for chromatin conformation in H1 cells (homo sapiens). It can be used with Predictors such as ORCA that have been trained on Hi-C data. Included in Test_setChr9_Evaluator.sif :

Scripts to process the data and send requests to Predictors in the GAME API ORCA evaluation support scripts from jzhoulab/orca Selene scripts from kathyxchen/selene Target values (large files) and hg38 reference genome

Prediction request details

This evaluator… See the full description on the dataset page: https://huggingface.co/datasets/Iluthra/3D_Chromatin_interaction_Evaluator_GAMEAPI_H1_ESC_Chromosome_9.