UniProt search (7/22/2025): * (Swiss-Prot reviewed entries only) download TSV with Taxonomic lineage (Ids), sequence, and length.
Curation steps:
Filtered for sequence length >=20 and <=2048
Extract Taxonomic IDs (domain, kingdom, phylum, class, order, family, genus, species) from taxonomic_lineage_ids column
Keep entry, family, and sequence information
Drop N/A
CD-HIT using Docker at 80% similarity threshold and n=5
Keep representative sequences
Create labels based on families
Remove… See the full description on the dataset page:
https://huggingface.co/datasets/GleghornLab/taxonomy_family.
