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tanoManzo/
hyenadna-large-1m-seqlen-hf_ft_BioS45_1kbpHG19_DHSs_H3K27AC

Name: hyenadna-large-1m-seqlen-hf_ft_BioS45_1kbpHG19_DHSs_H3K27AC
Availability: InStock

pytorch

hyenadna

generated_from_trainer

custom_code

LongSafari/hyenadna-large-1m-seqlen-hf

finetune

bsd-3-clause

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hyenadna-large-1m-seqlen-hf_ft_BioS45_1kbpHG19_DHSs_H3K27AC

This model is a fine-tuned version of LongSafari/hyenadna-large-1m-seqlen-hf on the None dataset. It achieves the following results on the evaluation set:

Loss: 0.4630
F1 Score: 0.8133
Precision: 0.7796
Recall: 0.85
Accuracy: 0.7964
Auc: 0.8733
Prc: 0.8740

Model description

More information needed

Intended uses & limitations

More information needed

Training and evaluation data

More information needed

Training procedure

Training hyperparameters

The following hyperparameters were used during training:

learning_rate: 1e-05
train_batch_size: 8
eval_batch_size: 8
seed: 42
optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
lr_scheduler_type: linear
num_epochs: 20
mixed_precision_training: Native AMP

Training results

Training Loss	Epoch	Step	Validation Loss	F1 Score	Precision	Recall	Accuracy	Auc	Prc
0.5578	0.2103	500	0.5077	0.7339	0.8087	0.6718	0.7459	0.8407	0.8258
0.5127	0.4207	1000	0.4832	0.7813	0.7861	0.7766	0.7732	0.8460	0.8411
0.4843	0.6310	1500	0.5096	0.7670	0.8214	0.7194	0.7720	0.8533	0.8519
0.4833	0.8414	2000	0.4942	0.8042	0.7317	0.8927	0.7732	0.8633	0.8521
0.4748	1.0517	2500	0.4991	0.7792	0.7997	0.7597	0.7753	0.8581	0.8511
0.4723	1.2621	3000	0.4819	0.7833	0.8276	0.7435	0.7854	0.8618	0.8531
0.474	1.4724	3500	0.4547	0.8026	0.8003	0.8048	0.7934	0.8717	0.8655
0.4531	1.6828	4000	0.4560	0.8197	0.7537	0.8984	0.7939	0.8696	0.8629
0.4601	1.8931	4500	0.4601	0.8135	0.7554	0.8815	0.7892	0.8658	0.8569
0.441	2.1035	5000	0.4680	0.8103	0.7545	0.875	0.7863	0.8610	0.8497
0.4267	2.3138	5500	0.4784	0.8150	0.7775	0.8565	0.7972	0.8705	0.8622
0.4336	2.5242	6000	0.4562	0.8032	0.7891	0.8177	0.7909	0.8684	0.8590
0.446	2.7345	6500	0.4630	0.8133	0.7796	0.85	0.7964	0.8733	0.8740

Framework versions

Transformers 4.42.3
Pytorch 2.3.0+cu121
Datasets 2.18.0
Tokenizers 0.19.0

tanoManzo/hyenadna-large-1m-seqlen-hf_ft_BioS45_1kbpHG19_DHSs_H3K27AC

hyenadna-large-1m-seqlen-hf_ft_BioS45_1kbpHG19_DHSs_H3K27AC

Model description

Intended uses & limitations

Training and evaluation data

Training procedure

Training hyperparameters

Training results

Framework versions

tanoManzo/
hyenadna-large-1m-seqlen-hf_ft_BioS45_1kbpHG19_DHSs_H3K27AC