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Promoter entity type| tag | meaning |
|---|---|
| Promoter | DNA promoter region |
pip install flair or pip install git+https://github.com/flairNLP/flair.git)1from flair.data import Sentence
2from flair.nn import Classifier
3from flair.tokenization import SciSpacyTokenizer
4
5text = "The upstream region of the glnA gene contained two putative extended promoter consensus sequences (p1 and p2)."
6sentence = Sentence(text, use_tokenizer=SciSpacyTokenizer())
7
8tagger = Classifier.load("regel-corpus/hunflair2-regel-promoter")
9tagger.predict(sentence)
10
11print('The following NER tags are found:')
12# iterate over entities and print
13for entity in sentence.get_spans('ner'):
14 print(entity)