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Enhancer entity type| tag | meaning |
|---|---|
| Enhancer | DNA enhancer region |
pip install flair or pip install git+https://github.com/flairNLP/flair.git)1from flair.data import Sentence
2from flair.nn import Classifier
3from flair.tokenization import SciSpacyTokenizer
4
5text = "An upstream activator of the mitogen-activated protein (MAP) kinase pathways was used to isolate an enhancer element located between -89 and -50 bp in PAI-1 promoter that was activated by MEKK-1."
6sentence = Sentence(text, use_tokenizer=SciSpacyTokenizer())
7
8tagger = Classifier.load("regel-corpus/hunflair2-regel-enhancer")
9tagger.predict(sentence)
10
11print('The following NER tags are found:')
12# iterate over entities and print
13for entity in sentence.get_spans('ner'):
14 print(entity)