Reference-based constrained deconvolution returning the naive CD4+ T cell proportion from EPIC-array blood methylation. The published EPIC IDOL-Ext library used 1,200 CpGs selected to optimize recovery of known artificial-mixture cell-type proportions; pyaging instead inherits Biolearn’s undocumented 240-CpG replacement, whose rows reproducibly comprise 10 positive and 10 negative maximal cell-versus-other methylation contrasts per subtype and are not a subset of the published 1,200 probes.

Browse every clock in the pyaging Clock Catalogue.

Salas, L.A., Zhang, Z., Koestler, D.C. et al. Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling. Nature Communications 13, 761 (2022).