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paolomanlapaz/
rispice-1000bp

Name: rispice-1000bp
Rating: 2.5 (36 reviews)

multi-label-classification

paolomanlapaz/rispice-base

adapter

apache-2.0

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RiSPICE LoRA Adapter (1000 bp)

This repository provides the 1000 bp LoRA adapter for RiSPICE (Rice SNP Prioritization Integrating Chromatin Effects), fine-tuned on top of DNABERT-2-117M for multi-label prediction of rice chromatin features from DNA sequences.

Model Summary

Method: RiSPICE (Rice SNP Prioritization Integrating Chromatin Effects)
Base Model: paolomanlapaz/rispice-base
Adapter Type: PEFT / LoRA
Sequence Length: 1000 bp
Task: Multi-label Chromatin Feature Prediction (num_labels=12)

Feature Order

The model outputs logits/probabilities corresponding to the following 12 chromatin features in exact order (Index 0 to 11):

Index	Feature
`0`	ATAC-Seq
`1`	H3K4ac
`2`	H3K4me2
`3`	H3K4me3
`4`	H3K9ac
`5`	H3K9me1
`6`	H3K23ac
`7`	H3K27ac
`8`	H3K27me3
`9`	H3K36me3
`10`	H4K12ac
`11`	H4K16ac

Usage & Pipeline Code

For dataset preprocessing, model loading, and batch inference scripts, please refer to our GitHub repository:
🔗 bioinfodlsu/rispice

paolomanlapaz/rispice-1000bp

RiSPICE LoRA Adapter (1000 bp)

Model Summary

Feature Order

Usage & Pipeline Code

paolomanlapaz/
rispice-1000bp