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matsschneider/
nucleotide-virus-model

Name: nucleotide-virus-model
Availability: InStock

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nucleotide-transformer-finetuned-virus

This model is a fine-tuned version of InstaDeepAI/nucleotide-transformer-500m-human-ref on the None dataset. It achieves the following results on the evaluation set:

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The following hyperparameters were used during training:

learning_rate: 1e-05
train_batch_size: 16
eval_batch_size: 64
seed: 42
optimizer: Use OptimizerNames.ADAMW_TORCH_FUSED with betas=(0.9,0.999) and epsilon=1e-08 and optimizer_args=No additional optimizer arguments
lr_scheduler_type: linear
lr_scheduler_warmup_steps: 250
training_steps: 1000

Training Loss	Epoch	Step	Validation Loss	Accuracy	F1	Precision	Recall
1.7706	1.2195	100	1.7555	0.2109	0.1031	0.1165	0.2109
1.7314	2.4390	200	1.7009	0.5234	0.4263	0.4459	0.5234
1.6533	3.6585	300	1.6000	0.8828	0.8708	0.9316	0.8828
1.5609	4.8780	400	1.5144	0.8828	0.8820	0.9230	0.8828
1.4758	6.0976	500	1.4379	0.8281	0.8186	0.9057	0.8281
1.403	7.3171	600	1.3714	0.9688	0.9686	0.9708	0.9688
1.3421	8.5366	700	1.3186	0.9844	0.9844	0.9851	0.9844
1.2952	9.7561	800	1.2775	0.9766	0.9767	0.9783	0.9766
1.2619	10.9756	900	1.2507	1.0	1.0	1.0	1.0
1.2419	12.1951	1000	1.2432	0.9922	0.9922	0.9925	0.9922