Autoencoder (TRACERx-focused, 3D)
This model is part of the TRACERx Datathon 2025 transcriptomics analysis pipeline.
Model Details
- Model Type: Autoencoder
- Dataset: TRACERx-focused
- Latent Dimensions: 3
- Compression Mode: transcriptome
- Framework: PyTorch
Usage
This model is designed to be used with the TRACERx Datathon 2025 analysis pipeline.
It will be automatically downloaded and cached when needed.
Model Architecture
- Input: Gene expression data
- Hidden layers: [input_size, 512, 256, 128, 3]
- Output: 3-dimensional latent representation
- Activation: ELU with batch normalization
Training Data
Trained exclusively on TRACERx open dataset
Files
autoencoder_3_latent_dims_oos_mode.pt: Main model weightslatent_df.csv: Example latent representations (if available)
