jmwang9/

deer

DEER (Dense Enzyme Retrieval) provides a method for finding functionally related human-bacteria isozymes using learned dense vector representations (embeddings). This huggingface repository contains the pre-trained models to reproduce the results and apply DEER to discover isozymes.

The full codes are available at GitHub: https://github.com/WangJiuming/deer/tree/main.

If you use the model in your research, please cite our paper with the following.

@misc{liu2025Exploring,
  author={Liu, H. and Shen, J. and others},
  title={Exploring Functional Insights into the Human Gut Microbiome via the Structural Proteome},
  year={2025},
  note={Manuscript under revision}
}