Tn5 Bias Model - Mouse TaT1
Description
Tn5 bias model trained as part of a ChromBPNet pipeline on pituitary ATAC-seq data.
It models the sequence-intrinsic insertion bias of the Tn5 transposase, which must be accounted for before learning true chromatin accessibility signals.
Files
models/bias.h5 — Trained Tn5 bias model
Training Details
- Genome: mm10
- Cell type: TaT1
- Data type: Bulk ATAC-seq
- Framework: ChromBPNet
Source
- DOI: 10.1186/s12915-021-01009-0
- SRA_ID: SRX8663775-6
Association
Part of a ChromBPNet atlas of mouse pituitary cell types.
