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Mardiyyah/
CeLLaTe-tapt-pubmedbert-tokenizer-adapted-baseline

Name: CeLLaTe-tapt-pubmedbert-tokenizer-adapted-baseline
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CeLLaTe-tapt-pubmedbert-tokenizer-adapted-baseline

This model is a fine-tuned version of microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract-fulltext on the Mardiyyah/TAPT_CeLLaTe2.0 dataset. It achieves the following results on the evaluation set:

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The following hyperparameters were used during training:

learning_rate: 3e-05
train_batch_size: 32
eval_batch_size: 32
seed: 3407
gradient_accumulation_steps: 2
total_train_batch_size: 64
optimizer: Use OptimizerNames.ADAMW_TORCH with betas=(0.9,0.999) and epsilon=1e-06 and optimizer_args=No additional optimizer arguments
lr_scheduler_type: linear
lr_scheduler_warmup_ratio: 0.06
num_epochs: 100
mixed_precision_training: Native AMP

Training Loss	Epoch	Step	Validation Loss	Accuracy	Perplexity
1.3684	1.0	14	1.2141	0.7641	3.3674
1.3406	2.0	28	1.1774	0.7648	3.2459
1.3246	3.0	42	1.1310	0.7689	3.0988
1.2929	4.0	56	1.1271	0.7675	3.0866
1.2489	5.0	70	1.1542	0.7641	3.1716
1.2216	6.0	84	1.0947	0.7733	2.9882
1.1987	7.0	98	1.0540	0.7750	2.8691
1.2006	8.0	112	1.0942	0.7706	2.9868
1.1659	9.0	126	1.0899	0.7701	2.9741
1.1546	10.0	140	1.0596	0.7757	2.8851
1.1216	11.0	154	1.0536	0.7735	2.8680
1.1113	12.0	168	1.0336	0.7779	2.8111
1.0872	13.0	182	1.0709	0.7716	2.9179
1.1014	14.0	196	1.0786	0.7746	2.9406
1.0882	15.0	210	1.0788	0.7727	2.9413
1.0683	16.0	224	1.0398	0.7796	2.8287
1.0612	17.0	238	1.0620	0.7712	2.8920